This folder contains all the variants from CandidMine (SNPs, small INDELs, CNVs and SVs). These are formatted according to different sets of reference genomes:

- The folder 'candidamine' contains the variants for each isolate, with the coordinates based on the reference genomes used in this database.

- The folder 'variants_Schikora-Tamarit_2024' contains the variants for the same isolates, but with coordinates relative to the reference genomes used in a recent study (Schikora-Tamarit & Gabaldón 2024, Nature Microbiology, https://pubmed.ncbi.nlm.nih.gov/38177305/).

To understand all the variant files, please refer to the documentation of perSVade (https://github.com/Gabaldonlab/perSVade), which is the tool used to obtain these variants.